Detailed information of SNP:
|
SNP ID:
sf0232537684(Gbrowse)
Chromosome: chr02 Position: 32537684 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 97.30% | 2.70% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 487 | 93.02% | 6.98% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 329 | 90.88% | 9.12% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 66 | 95.45% | 4.55% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0232537684 | C->T | INTERGENIC | None |