Detailed information of SNP:
|
SNP ID:
sf0232550317(Gbrowse)
Chromosome: chr02 Position: 32550317 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 86.11% | 13.89% |
| All Indica | 798 | 99.37% | 0.63% |
| All Japonica | 491 | 66.19% | 33.81% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 82.39% | 17.61% |
| Tropical Japonica | 91 | 4.40% | 95.60% |
| Japonica Intermediate | 65 | 69.23% | 30.77% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0232550317 | C->T | INTERGENIC | None |