Detailed information of SNP:
|
SNP ID:
sf0232676651(Gbrowse)
Chromosome: chr02 Position: 32676651 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 86.59% | 13.41% |
| All Indica | 794 | 83.38% | 16.62% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 63 | 44.44% | 55.56% |
| Indica I | 370 | 81.89% | 18.11% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 77.73% | 22.27% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0232676651 | G->A | INTERGENIC | None |