Detailed information of SNP:
|
SNP ID:
sf0232693541(Gbrowse)
Chromosome: chr02 Position: 32693541 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 53.60% | 46.40% |
| All Indica | 799 | 19.27% | 80.73% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 21.60% | 78.40% |
| Indica II | 213 | 8.92% | 91.08% |
| Indica Intermediate | 211 | 25.59% | 74.41% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0232693541 | A->G | LOC_Os02g53440(LOC_Os02g53440.1) | INTRON |