Detailed information of SNP:
|
SNP ID:
sf0232749887(Gbrowse)
Chromosome: chr02 Position: 32749887 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1289 | 58.49% | 41.51% |
| All Indica | 708 | 98.16% | 1.84% |
| All Japonica | 493 | 0.41% | 99.59% |
| Aus | 47 | 80.85% | 19.15% |
| Indica I | 328 | 98.48% | 1.52% |
| Indica II | 193 | 97.93% | 2.07% |
| Indica Intermediate | 187 | 97.86% | 2.14% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 64 | 3.12% | 96.88% |
| Group VI/Aromatic | 4 | 75.00% | 25.00% |
| Intermediate | 37 | 43.24% | 56.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0232749887 | T->C | INTERGENIC | None |