Detailed information of SNP:
|
SNP ID:
sf0232819819(Gbrowse)
Chromosome: chr02 Position: 32819819 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 60.55% | 39.45% |
| All Indica | 794 | 94.08% | 5.92% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 372 | 94.35% | 5.65% |
| Indica II | 212 | 91.98% | 8.02% |
| Indica Intermediate | 210 | 95.71% | 4.29% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0232819819 | C->T | INTERGENIC | None |