Detailed information of SNP:
|
SNP ID:
sf0232868437(Gbrowse)
Chromosome: chr02 Position: 32868437 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1366 | 98.02% | 1.98% |
| All Indica | 794 | 99.87% | 0.13% |
| All Japonica | 451 | 94.24% | 5.76% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 304 | 91.45% | 8.55% |
| Tropical Japonica | 90 | 100.00% | 0.00% |
| Japonica Intermediate | 57 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0232868437 | T->A | INTERGENIC | None |