Detailed information of SNP:
|
SNP ID:
sf0232873820(Gbrowse)
Chromosome: chr02 Position: 32873820 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1392 | 84.84% | 15.16% |
| All Indica | 799 | 96.12% | 3.88% |
| All Japonica | 471 | 82.38% | 17.62% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 318 | 86.16% | 13.84% |
| Tropical Japonica | 89 | 96.63% | 3.37% |
| Japonica Intermediate | 64 | 43.75% | 56.25% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0232873820 | C->T | INTERGENIC | None |