Detailed information of SNP:
|
SNP ID:
sf0232875246(Gbrowse)
Chromosome: chr02 Position: 32875246 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1268 | 97.79% | 2.21% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 349 | 92.26% | 7.74% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 219 | 88.13% | 11.87% |
| Tropical Japonica | 69 | 100.00% | 0.00% |
| Japonica Intermediate | 61 | 98.36% | 1.64% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0232875246 | A->G | INTERGENIC | None |