Detailed information of SNP:
|
SNP ID:
sf0232908837(Gbrowse)
Chromosome: chr02 Position: 32908837 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1349 | 85.10% | 14.90% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 427 | 55.04% | 44.96% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 287 | 61.32% | 38.68% |
| Tropical Japonica | 76 | 13.16% | 86.84% |
| Japonica Intermediate | 64 | 76.56% | 23.44% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0232908837 | T->A | INTERGENIC | None |