Detailed information of SNP:
|
SNP ID:
sf0233051877(Gbrowse)
Chromosome: chr02 Position: 33051877 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 97.09% | 2.91% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 56 | 46.43% | 53.57% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0233051877 | C->G | LOC_Os02g53990(LOC_Os02g53990.1) | INTRON |