Detailed information of SNP:
|
SNP ID:
sf0233053333(Gbrowse)
Chromosome: chr02 Position: 33053333 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1387 | 97.33% | 2.67% |
| All Indica | 798 | 99.12% | 0.88% |
| All Japonica | 467 | 95.50% | 4.50% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 327 | 98.47% | 1.53% |
| Tropical Japonica | 91 | 97.80% | 2.20% |
| Japonica Intermediate | 49 | 71.43% | 28.57% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0233053333 | A->G | LOC_Os02g53990(LOC_Os02g53990.1) | INTRON |