Detailed information of SNP:
|
SNP ID:
sf0233248581(Gbrowse)
Chromosome: chr02 Position: 33248581 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 87.84% | 12.16% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 493 | 66.33% | 33.67% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 332 | 53.31% | 46.69% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0233248581 | T->G | LOC_Os02g54254(LOC_Os02g54254.1) | INTRON |
| sf0233248581 | T->G | LOC_Os02g54254(LOC_Os02g54254.2) | INTRON |