Detailed information of SNP:
|
SNP ID:
sf0233276940(Gbrowse)
Chromosome: chr02 Position: 33276940 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 54.71% | 45.29% |
| All Indica | 783 | 87.23% | 12.77% |
| All Japonica | 496 | 1.01% | 98.99% |
| Aus | 65 | 93.85% | 6.15% |
| Indica I | 367 | 92.10% | 7.90% |
| Indica II | 209 | 82.78% | 17.22% |
| Indica Intermediate | 207 | 83.09% | 16.91% |
| Temperate Japonica | 334 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 28.57% | 71.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0233276940 | A->T | LOC_Os02g54280(LOC_Os02g54280.1) | INTRON |