Detailed information of SNP:
|
SNP ID:
sf0233300979(Gbrowse)
Chromosome: chr02 Position: 33300979 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1338 | 90.36% | 9.64% |
| All Indica | 748 | 90.51% | 9.49% |
| All Japonica | 468 | 88.25% | 11.75% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 341 | 88.86% | 11.14% |
| Indica II | 205 | 91.71% | 8.29% |
| Indica Intermediate | 202 | 92.08% | 7.92% |
| Temperate Japonica | 307 | 82.74% | 17.26% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0233300979 | T->C | LOC_Os02g54320(LOC_Os02g54320.1) | INTRON |