Detailed information of SNP:
|
SNP ID:
sf0233326569(Gbrowse)
Chromosome: chr02 Position: 33326569 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 58.16% | 41.84% |
| All Indica | 798 | 97.99% | 2.01% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 66 | 34.85% | 65.15% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 35.00% | 65.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0233326569 | G->A | INTERGENIC | None |