Detailed information of SNP:
|
SNP ID:
sf0233351624(Gbrowse)
Chromosome: chr02 Position: 33351624 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 54.80% | 45.20% |
| All Indica | 797 | 92.22% | 7.78% |
| All Japonica | 496 | 1.01% | 98.99% |
| Aus | 67 | 32.84% | 67.16% |
| Indica I | 374 | 97.06% | 2.94% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 210 | 80.95% | 19.05% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 30.95% | 69.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0233351624 | G->A | INTERGENIC | None |