Detailed information of SNP:
|
SNP ID:
sf0233484109(Gbrowse)
Chromosome: chr02 Position: 33484109 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1376 | 95.57% | 4.43% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 455 | 87.03% | 12.97% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 297 | 80.81% | 19.19% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 96.97% | 3.03% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0233484109 | A->G | INTERGENIC | None |