Detailed information of SNP:
|
SNP ID:
sf0233517690(Gbrowse)
Chromosome: chr02 Position: 33517690 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1287 | 96.11% | 3.89% |
| All Indica | 713 | 96.77% | 3.23% |
| All Japonica | 495 | 99.80% | 0.20% |
| Aus | 31 | 38.71% | 61.29% |
| Indica I | 349 | 97.71% | 2.29% |
| Indica II | 186 | 95.16% | 4.84% |
| Indica Intermediate | 178 | 96.63% | 3.37% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 13 | 69.23% | 30.77% |
| Intermediate | 35 | 91.43% | 8.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0233517690 | C->T | INTERGENIC | None |