Detailed information of SNP:
|
SNP ID:
sf0233550486(Gbrowse)
Chromosome: chr02 Position: 33550486 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1250 | 97.68% | 2.32% |
| All Indica | 796 | 98.37% | 1.63% |
| All Japonica | 338 | 95.56% | 4.44% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 98.12% | 1.88% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 215 | 96.28% | 3.72% |
| Tropical Japonica | 80 | 96.25% | 3.75% |
| Japonica Intermediate | 43 | 90.70% | 9.30% |
| Group VI/Aromatic | 11 | 100.00% | 0.00% |
| Intermediate | 38 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0233550486 | G->T | LOC_Os02g54790(LOC_Os02g54790.1) | INTRON |