Detailed information of SNP:
|
SNP ID:
sf0233602367(Gbrowse)
Chromosome: chr02 Position: 33602367 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1393 | 89.73% | 10.27% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 473 | 71.67% | 28.33% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 319 | 76.49% | 23.51% |
| Tropical Japonica | 88 | 42.05% | 57.95% |
| Japonica Intermediate | 66 | 87.88% | 12.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0233602367 | A->G | LOC_Os02g54880(LOC_Os02g54880.1) | INTRON |