Detailed information of SNP:
|
SNP ID:
sf0233642231(Gbrowse)
Chromosome: chr02 Position: 33642231 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1337 | 77.49% | 22.51% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 421 | 31.12% | 68.88% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 283 | 29.68% | 70.32% |
| Tropical Japonica | 81 | 14.81% | 85.19% |
| Japonica Intermediate | 57 | 61.40% | 38.60% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 80.56% | 19.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0233642231 | A->G | INTERGENIC | None |