Detailed information of SNP:



SNP ID: sf0233642854(Gbrowse)

Chromosome: chr02

Position: 33642854
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1418 93.02% 6.98%
All Indica798 87.84% 12.16%
All Japonica497 100.00% 0.00%
Aus67 100.00% 0.00%
Indica I374 90.64% 9.36%
Indica II213 84.51% 15.49%
Indica Intermediate211 86.26% 13.74%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 95.24% 4.76%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0233642854 C->T INTERGENIC None