Detailed information of SNP:
|
SNP ID:
sf0233653415(Gbrowse)
Chromosome: chr02 Position: 33653415 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1330 | 87.22% | 12.78% |
| All Indica | 712 | 78.09% | 21.91% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 90.77% | 9.23% |
| Indica I | 337 | 80.12% | 19.88% |
| Indica II | 181 | 78.45% | 21.55% |
| Indica Intermediate | 194 | 74.23% | 25.77% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0233653415 | G->A | INTERGENIC | None |