Detailed information of SNP:
|
SNP ID:
sf0233665426(Gbrowse)
Chromosome: chr02 Position: 33665426 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 96.33% | 3.67% |
| All Indica | 796 | 94.10% | 5.90% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 93.30% | 6.70% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 210 | 91.43% | 8.57% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0233665426 | G->A | INTERGENIC | None |