Detailed information of SNP:
|
SNP ID:
sf0233678535(Gbrowse)
Chromosome: chr02 Position: 33678535 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 56.50% | 43.50% |
| All Indica | 796 | 90.20% | 9.80% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 373 | 88.74% | 11.26% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 210 | 91.90% | 8.10% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 26.19% | 73.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0233678535 | G->A | INTERGENIC | None |