Detailed information of SNP:
|
SNP ID:
sf0233687532(Gbrowse)
Chromosome: chr02 Position: 33687532 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1356 | 98.23% | 1.77% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 439 | 94.76% | 5.24% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 301 | 98.67% | 1.33% |
| Tropical Japonica | 79 | 97.47% | 2.53% |
| Japonica Intermediate | 59 | 71.19% | 28.81% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 97.37% | 2.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0233687532 | G->A | LOC_Os02g54990(LOC_Os02g54990.2) | INTRON |