Detailed information of SNP:
|
SNP ID:
sf0233721821(Gbrowse)
Chromosome: chr02 Position: 33721821 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1389 | 97.12% | 2.88% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 468 | 91.88% | 8.12% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 313 | 89.14% | 10.86% |
| Tropical Japonica | 87 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0233721821 | C->T | LOC_Os02g55060(LOC_Os02g55060.2) | INTRON |
| sf0233721821 | C->T | LOC_Os02g55060(LOC_Os02g55060.1) | UTR_3_PRIME |