Detailed information of SNP:
|
SNP ID:
sf0233735408(Gbrowse)
Chromosome: chr02 Position: 33735408 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1281 | 77.75% | 22.25% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 366 | 24.04% | 75.96% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 226 | 11.95% | 88.05% |
| Tropical Japonica | 81 | 28.40% | 71.60% |
| Japonica Intermediate | 59 | 64.41% | 35.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 36 | 86.11% | 13.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0233735408 | A->G | LOC_Os02g55090(LOC_Os02g55090.1) | INTRON |