Detailed information of SNP:
SNP ID:
sf0233744002(Gbrowse)
Chromosome: chr02 Position: 33744002 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
---|---|---|---|
All | 1418 | 79.20% | 20.80% |
All Indica | 798 | 66.29% | 33.71% |
All Japonica | 497 | 99.80% | 0.20% |
Aus | 67 | 82.09% | 17.91% |
Indica I | 374 | 70.86% | 29.14% |
Indica II | 213 | 68.08% | 31.92% |
Indica Intermediate | 211 | 56.40% | 43.60% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 98.53% | 1.47% |
Group VI/Aromatic | 14 | 64.29% | 35.71% |
Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0233744002 | A->G | INTERGENIC | None |