Detailed information of SNP:
|
SNP ID:
sf0233787599(Gbrowse)
Chromosome: chr02 Position: 33787599 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1399 | 98.00% | 2.00% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 478 | 94.35% | 5.65% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 323 | 99.38% | 0.62% |
| Tropical Japonica | 91 | 94.51% | 5.49% |
| Japonica Intermediate | 64 | 68.75% | 31.25% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0233787599 | T->C | LOC_Os02g55170(LOC_Os02g55170.1) | INTRON |