Detailed information of SNP:
|
SNP ID:
sf0233850027(Gbrowse)
Chromosome: chr02 Position: 33850027 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 95.55% | 4.45% |
| All Indica | 798 | 99.25% | 0.75% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 24.24% | 75.76% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0233850027 | C->T | LOC_Os02g55300(LOC_Os02g55300.1) | UTR_3_PRIME |