Detailed information of SNP:
|
SNP ID:
sf0233895816(Gbrowse)
Chromosome: chr02 Position: 33895816 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1382 | 91.10% | 8.90% |
| All Indica | 765 | 84.58% | 15.42% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 362 | 80.11% | 19.89% |
| Indica II | 204 | 88.24% | 11.76% |
| Indica Intermediate | 199 | 88.94% | 11.06% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0233895816 | C->T | LOC_Os02g55350(LOC_Os02g55350.1) | Non-Synonymous SNP |