Detailed information of SNP:
|
SNP ID:
sf0233900855(Gbrowse)
Chromosome: chr02 Position: 33900855 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1395 | 97.20% | 2.80% |
| All Indica | 777 | 95.50% | 4.50% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 363 | 98.07% | 1.93% |
| Indica II | 210 | 89.52% | 10.48% |
| Indica Intermediate | 204 | 97.06% | 2.94% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0233900855 | C->T | LOC_Os02g55350(LOC_Os02g55350.1) | INTRON |