Detailed information of SNP:
|
SNP ID:
sf0233926277(Gbrowse)
Chromosome: chr02 Position: 33926277 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 52.26% | 47.74% |
| All Indica | 794 | 91.31% | 8.69% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 212 | 89.15% | 10.85% |
| Indica Intermediate | 207 | 79.71% | 20.29% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 26.19% | 73.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0233926277 | G->C | LOC_Os02g55400(LOC_Os02g55400.1) | Synonymous |