Detailed information of SNP:
|
SNP ID:
sf0233940590(Gbrowse)
Chromosome: chr02 Position: 33940590 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 52.89% | 47.11% |
| All Indica | 799 | 91.99% | 8.01% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 66 | 0.00% | 100.00% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 89.20% | 10.80% |
| Indica Intermediate | 211 | 82.94% | 17.06% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 28.57% | 71.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0233940590 | C->A | INTERGENIC | None |