Detailed information of SNP:
|
SNP ID:
sf0234213630(Gbrowse)
Chromosome: chr02 Position: 34213630 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 56.73% | 43.27% |
| All Indica | 799 | 25.16% | 74.84% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 34.67% | 65.33% |
| Indica II | 213 | 12.21% | 87.79% |
| Indica Intermediate | 211 | 21.33% | 78.67% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0234213630 | C->T | LOC_Os02g55900(LOC_Os02g55900.1) | INTRON |