Detailed information of SNP:
|
SNP ID:
sf0234249673(Gbrowse)
Chromosome: chr02 Position: 34249673 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 91.68% | 8.32% |
| All Indica | 798 | 87.47% | 12.53% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 82.40% | 17.60% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 210 | 86.19% | 13.81% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0234249673 | A->G | LOC_Os02g55970(LOC_Os02g55970.2) | INTRON |