Detailed information of SNP:
|
SNP ID:
sf0234264312(Gbrowse)
Chromosome: chr02 Position: 34264312 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1351 | 58.40% | 41.60% |
| All Indica | 794 | 34.89% | 65.11% |
| All Japonica | 439 | 95.44% | 4.56% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 37.07% | 62.93% |
| Indica II | 213 | 23.47% | 76.53% |
| Indica Intermediate | 206 | 42.72% | 57.28% |
| Temperate Japonica | 295 | 97.97% | 2.03% |
| Tropical Japonica | 84 | 97.62% | 2.38% |
| Japonica Intermediate | 60 | 80.00% | 20.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 37 | 67.57% | 32.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0234264312 | C->T | INTERGENIC | None |