Detailed information of SNP:
|
SNP ID:
sf0234320354(Gbrowse)
Chromosome: chr02 Position: 34320354 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 89.45% | 10.55% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 473 | 69.77% | 30.23% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 317 | 58.99% | 41.01% |
| Tropical Japonica | 90 | 98.89% | 1.11% |
| Japonica Intermediate | 66 | 81.82% | 18.18% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0234320354 | A->G | LOC_Os02g56090(LOC_Os02g56090.1) | INTRON |