Detailed information of SNP:
|
SNP ID:
sf0234344516(Gbrowse)
Chromosome: chr02 Position: 34344516 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 56.56% | 43.44% |
| All Indica | 799 | 88.49% | 11.51% |
| All Japonica | 497 | 3.42% | 96.58% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 64.79% | 35.21% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0234344516 | G->A | INTERGENIC | None |