Detailed information of SNP:
|
SNP ID:
sf0234345385(Gbrowse)
Chromosome: chr02 Position: 34345385 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 63.26% | 36.74% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 497 | 4.02% | 95.98% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0234345385 | T->C | INTERGENIC | None |