Detailed information of SNP:
|
SNP ID:
sf0234351059(Gbrowse)
Chromosome: chr02 Position: 34351059 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 55.41% | 44.59% |
| All Indica | 799 | 87.11% | 12.89% |
| All Japonica | 495 | 3.03% | 96.97% |
| Aus | 66 | 68.18% | 31.82% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 60.09% | 39.91% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 92 | 7.61% | 92.39% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0234351059 | A->G | INTERGENIC | None |