Detailed information of SNP:
|
SNP ID:
sf0234352787(Gbrowse)
Chromosome: chr02 Position: 34352787 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 50.50% | 49.50% |
| All Indica | 799 | 81.10% | 18.90% |
| All Japonica | 496 | 2.02% | 97.98% |
| Aus | 66 | 50.00% | 50.00% |
| Indica I | 375 | 74.13% | 25.87% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 78.20% | 21.80% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 93 | 2.15% | 97.85% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 39 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0234352787 | A->C | LOC_Os02g56150(LOC_Os02g56150.2) | INTRON |
| sf0234352787 | A->C | LOC_Os02g56150(LOC_Os02g56150.1) | INTRON |