Detailed information of SNP:
|
SNP ID:
sf0234353364(Gbrowse)
Chromosome: chr02 Position: 34353364 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 62.41% | 37.59% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 497 | 3.02% | 96.98% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0234353364 | A->C | LOC_Os02g56150(LOC_Os02g56150.2) | INTRON |
| sf0234353364 | A->C | LOC_Os02g56150(LOC_Os02g56150.1) | INTRON |