Detailed information of SNP:
|
SNP ID:
sf0234353616(Gbrowse)
Chromosome: chr02 Position: 34353616 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 97.65% | 2.35% |
| All Indica | 796 | 99.25% | 0.75% |
| All Japonica | 495 | 99.39% | 0.61% |
| Aus | 57 | 71.93% | 28.07% |
| Indica I | 374 | 98.93% | 1.07% |
| Indica II | 211 | 99.05% | 0.95% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0234353616 | G->A | LOC_Os02g56150(LOC_Os02g56150.2) | INTRON |
| sf0234353616 | G->A | LOC_Os02g56150(LOC_Os02g56150.1) | INTRON |