Detailed information of SNP:
|
SNP ID:
sf0234390151(Gbrowse)
Chromosome: chr02 Position: 34390151 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1174 | 50.09% | 49.91% |
| All Indica | 561 | 93.40% | 6.60% |
| All Japonica | 496 | 3.43% | 96.57% |
| Aus | 65 | 35.38% | 64.62% |
| Indica I | 235 | 91.91% | 8.09% |
| Indica II | 187 | 95.19% | 4.81% |
| Indica Intermediate | 139 | 93.53% | 6.47% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 93 | 7.53% | 92.47% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 38 | 34.21% | 65.79% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0234390151 | C->T | INTERGENIC | None |