Detailed information of SNP:
|
SNP ID:
sf0234390841(Gbrowse)
Chromosome: chr02 Position: 34390841 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 57.05% | 42.95% |
| All Indica | 799 | 29.79% | 70.21% |
| All Japonica | 497 | 97.59% | 2.41% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 14.93% | 85.07% |
| Indica II | 213 | 53.52% | 46.48% |
| Indica Intermediate | 211 | 32.23% | 67.77% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0234390841 | G->A | INTERGENIC | None |