Detailed information of SNP:
|
SNP ID:
sf0234391425(Gbrowse)
Chromosome: chr02 Position: 34391425 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 56.09% | 43.91% |
| All Indica | 797 | 89.84% | 10.16% |
| All Japonica | 495 | 3.43% | 96.57% |
| Aus | 67 | 43.28% | 56.72% |
| Indica I | 375 | 85.07% | 14.93% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 209 | 91.87% | 8.13% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 92 | 5.43% | 94.57% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 39 | 48.72% | 51.28% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0234391425 | G->A | INTERGENIC | None |