Detailed information of SNP:
|
SNP ID:
sf0234391652(Gbrowse)
Chromosome: chr02 Position: 34391652 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1405 | 55.80% | 44.20% |
| All Indica | 793 | 89.41% | 10.59% |
| All Japonica | 497 | 3.62% | 96.38% |
| Aus | 66 | 42.42% | 57.58% |
| Indica I | 373 | 84.45% | 15.55% |
| Indica II | 211 | 96.21% | 3.79% |
| Indica Intermediate | 209 | 91.39% | 8.61% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 35 | 51.43% | 48.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0234391652 | C->A | INTERGENIC | None |